sample tissue condition fpkm SRR1035239 liver transgenic mCherry control 857.329 SRR1562530 liver normal 835.04 SRR1039571 gastrointestinal diet 0.1 NPM 637.587 SRR891504 liver normal 556.41 SRR1035237 liver transgenic UHRF1 415.486 SRR1534351 larvae 500 ug/l BDE47 treatment 414.49300000000005 SRR1039573 gastrointestinal diet 0.75 NPM 371.827 SRR1534350 larvae 5 ug/l BDE47 treatment 295.53 SRR1562529 intestine and pancreas normal 268.783 SRR1104058 heart normal 242.144 SRR1534349 larvae DMSO vehicle 230.796 SRR1104059 heart kctd10 mut 187.803 SRR891510 muscle normal 177.058 SRR1188160 embryo Insulin 4 hpi 173.97 SRR1004789 larvae impdh2 morpholino 172.331 SRR1028002 head normal 166.57299999999998 SRR372802 5 dpf normal 163.732 SRR1647681 head kidney SVCV treatment 156.42600000000002 SRR1523214 embryo glut12 morpholino 149.058 SRR1562532 spleen normal 148.483 SRR1167753 embryo bacterial infection 141.484 SRR1167757 embryo mpeg1 morpholino and bacterial infection 139.66299999999998 SRR038626 embryo control morpholino and bacterial infection 139.593 SRR519747 6 dpf VD3 treatment 136.34799999999998 SRR1647680 head kidney SVCV treatment 132.529 SRR1647683 spleen SVCV treatment 131.22799999999998 SRR519752 7 dpf VD3 treatment 128.877 SRR630463 5 dpf normal 125.40299999999999 SRR519732 7 dpf FETOH treatment 124.1 SRR1523211 embryo control morpholino 123.094 SRR1028004 head normal 122.29799999999999 SRR610741 3 dpf express Ras 118.441 SRR1167756 embryo mpeg1 morpholino 115.695 SRR038624 embryo traf6 morpholino and bacterial infection 113.382 SRR535849 larvae normal 111.48200000000001 SRR633516 larvae normal 111.37200000000001 SRR726541 5 dpf infection with Mycobacterium marinum 110.459 SRR1291417 5 dpi injected marinum 107.895 SRR535847 larvae normal 106.16799999999999 SRR1005530 embryo RPL11 morpholino 105.24799999999999 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 104.773 SRR1167752 embryo normal 104.26899999999999 SRR519727 6 dpf FETOH treatment 103.618 SRR1205160 5dpf transgenic sqET20 and GFP+ 103.51700000000001 SRR1342216 embryo norml 102.84100000000001 SRR776509 embryo Salmonella infected 102.681 SRR1291414 5 dpi normal 99.8942 SRR630464 5 dpf injected epidermidis 98.4983 SRR1004787 larvae impdh1a morpholino 96.2274 SRR633550 larvae exposed to hypoxia stress 95.6018 SRR535848 larvae hoxb1b mut 94.1829 SRR535850 larvae hoxb1b mut 91.8572 SRR535851 larvae normal 91.5994 SRR1188148 embryo Control PBS 0.5 hpi 90.14399999999999 SRR1647684 spleen SVCV treatment 89.3845 SRR776510 embryo Salmonella infected and miR-146 knockdown 87.8598 SRR1028003 head normal 87.8523 SRR891512 blood normal 86.7728 SRR535852 larvae hoxb1b mut 86.6952 SRR1647679 head kidney normal 85.1926 SRR726542 5 dpf infection with control 83.8569 SRR1708344 embryo MUTPS 81.1342 SRR519742 4 dpf VD3 treatment 79.482 SRR519722 4 dpf FETOH treatment 78.9829 SRR1708346 embryo SIBPS 77.7289 SRR633544 larvae exposed to cold stress 75.9667 SRR1167763 embryo ptpn6 morpholino and bacterial infection 74.1557 SRR610740 3 dpf normal 73.7852 SRR1647682 spleen normal 72.8574 SRR1188152 embryo Insulin 0.5 hpi 70.7695 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 68.2344 SRR801556 embryo RPS19 and p53 morpholino 67.7612 SRR1188156 embryo Control PBS 4 hpi 63.8097 SRR1342217 embryo infection with Mycobacterium marinum 62.04 SRR801555 embryo RPS19 morpholino 60.1168 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 60.0479 SRR1342218 embryo marco morpholino 57.6497 SRR527833 5 dpf normal 56.8247 SRR726540 5 dpf normal 56.3913 SRR372800 2 dpf normal 53.853 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 53.828 SRR610742 3 dpf express NICD 52.1641 SRR1004785 larvae normal 52.1513 SRR516128 skin male and 5 month 50.4084 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 49.4003 SRR516129 skin male and 5 month 46.2158 SRR065197 3 dpf U1C knockout 46.1001 SRR1562531 muscle normal 46.0698 ERR023143 swim bladder normal 45.9129 SRR1299129 caudal fin Seven days time after treatment 44.7124 SRR519737 2 dpf VD3 treatment 44.3373 ERR023146 head kidney normal 43.7203 SRR516133 skin male and 5 month 43.0876 SRR1005529 embryo control morpholino 42.5549 SRR801554 embryo control morpholino 42.4908 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 42.4388 SRR519717 2 dpf FETOH treatment 40.9646 SRR1205154 5dpf transgenic sqET20 40.0403 SRR776507 embryo normal 39.1685 SRR516124 skin male and 3.5 year 38.2871 SRR941753 posterior pectoral fin normal 37.8844 SRR1708345 embryo SIBAS 36.2032 SRR831692 embryo normal 35.6733 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 35.1666 SRR1708343 embryo MUTAS 34.5486 SRR1299127 caudal fin Two days time after treatment 34.2177 SRR527834 head normal 33.7818 SRR1004786 larvae control morpholino 32.4523 SRR038625 embryo traf6 morpholino 32.1314 SRR1167762 embryo ptpn6 morpholino 31.6064 SRR516130 skin male and 5 month 31.2597 SRR527835 tail normal 30.8382 SRR1299128 caudal fin Three days time after treatment 30.3586 SRR700537 heart Gata4 morpholino 30.1099 SRR942764 embryo myd88-/- 29.888 SRR941749 anterior pectoral fin normal 29.6724 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 29.4774 SRR065196 3 dpf normal 28.7515 SRR1004788 larvae impdh1b morpholino 28.3171 SRR1648856 brain normal 28.2801 SRR1569491 embryo normal 27.7098 SRR749515 24 hpf eif3ha morphant 27.5758 SRR516134 skin male and 5 month 27.3332 SRR516123 skin male and 3.5 year 27.2008 SRR535978 larvae normal 25.3677 SRR516121 skin male and 3.5 year 25.1327 SRR1299124 caudal fin Zero day time after treatment 24.7427 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 24.605999999999998 SRR658543 6 somite Gata5 morphan 24.5641 SRR372798 28 hpf normal 23.7995 SRR527836 24hpf normal 22.451 SRR516131 skin male and 5 month 22.1724 SRR942769 embryo myd88+/+ 21.9645 SRR527840 24hpf normal 21.7783 SRR535986 larvae nhsl1b mut 21.5738 SRR594771 endothelium normal 21.4261 SRR527832 16-36 hpf normal 21.3796 SRR658533 bud normal 21.2797 SRR516127 skin male and 5 month 21.0594 SRR700534 heart control morpholino 21.0483 SRR1299126 caudal fin One day time after treatment 21.0324 SRR516132 skin male and 5 month 20.9806 SRR658539 bud Gata5/6 morphant 20.531 SRR527844 24hpf normal 20.4828 SRR658547 6 somite Gata5/6 morphant 19.8332 SRR038627 embryo control morpholino 19.3829 SRR516135 skin male and 5 month 18.9685 SRR891495 heart normal 18.7389 SRR594769 blood normal 18.5803 SRR749514 24 hpf normal 18.3608 SRR1299125 caudal fin Half day time after treatment 18.2354 SRR776508 embryo miR-146 knockdown 17.96 SRR1648854 brain normal 17.1872 SRR516125 skin male and 3.5 year 16.869 SRR516122 skin male and 3.5 year 16.6505 SRR957180 heart 7 days after heart tip amputation 15.8643 SRR1562533 testis normal 15.3422 SRR658541 6 somite normal 14.9606 SRR516126 skin male and 5 month 14.7901 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 14.2013 SRR658537 bud Gata6 morphant 14.1609 SRR658545 6 somite Gata6 morphant 13.9785 SRR1569495 embryo normal 13.2082 SRR658535 bud Gata5 morphant 13.196 SRR1562528 eye normal 13.110999999999999 SRR1035978 13 hpf rx3-/- 12.1443 SRR1035981 13 hpf rx3+/+ or rx3+/- 12.1203 SRR535890 larvae normal 11.1755 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 10.9213 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 10.713 SRR592703 pineal gland normal 10.1841 SRR800045 muscle normal 9.65254 SRR592701 pineal gland normal 9.61346 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 9.530339999999999 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 9.0954 SRR535943 larvae vangl mut 8.7321 SRR535913 larvae krox mut 8.59793 SRR592698 pineal gland normal 8.452630000000001 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 8.44747 SRR1035984 13 hpf normal 8.40071 SRR592702 pineal gland normal 8.21924 SRR592699 pineal gland normal 8.14968 SRR592700 pineal gland normal 8.034419999999999 ERR023145 heart normal 7.35158 SRR535926 larvae normal 7.305839999999999 SRR957181 heart normal 7.20171 SRR1648855 brain normal 6.84895 SRR797917 embryo pbx2/4-MO and prdm1-/- 6.594180000000001 SRR891511 brain normal 5.90309 SRR797914 embryo pbx2/4-MO 5.87479 SRR748488 sperm normal 5.87107 ERR023144 brain normal 5.31865 SRR797911 embryo prdm1-/- 5.272 SRR1565805 brain normal 4.9896199999999995 SRR1048059 pineal gland light 4.75534 SRR1048061 pineal gland dark 4.65604 SRR1565811 brain normal 4.60392 SRR1565817 brain normal 4.59235 SRR797908 embryo normal 4.23997 SRR372796 bud normal 4.20558 SRR1565807 brain normal 4.0737 SRR1565819 brain normal 4.026330000000001 SRR1565813 brain normal 3.93762 SRR1565815 brain normal 3.84681 SRR1565809 brain normal 2.60173 SRR514028 retina control morpholino 2.36232 SRR748489 egg normal 1.9258 SRR514030 retina id2a morpholino 1.54634 ERR594418 retina transgenic flk1 and develop tumors 1.30187 ERR594416 retina transgenic flk1 0.5113840000000001 SRR1021215 sphere stage Mzeomesa 0.134639 SRR372793 shield normal 0.113631 SRR748491 germ ring normal 0.08517480000000001 ERR594417 retina normal 0.034507199999999995 SRR1021213 sphere stage normal 0.0227551 SRR372791 dome normal 0.020519799999999998